Solutions > Applications > Life Sciences - Molecular Dynamics
Molecular dynamics (MD) is a computer simulation of physical movements of atoms and molecules. The atoms and molecules are allows to interact for a certain period of time, and then the motion of the atoms can be observed. These simulations perform very will in environments consisting of vSMP Foundation. The shared memory architecture can run all these applications with good performance, sometimes leveraging the large compute, memory, or bandwidth configurations or a combination of each.
Popular Applications include:
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DL POLY
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GROMACS
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MOLPRO
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NAMD
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OpenEye ROCS
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PARATEC
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Schrödinger Desmond
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Turbomole
- BLAST
- 454/Newbler
- Abyss
- Bowtie
- CLC Bio
- FASTA
- HMMER
- Illumina
- mpiBLAST
- SOAPDenovo
- TopHat
- Velvet

